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Originally published In Press as doi:10.1074/jbc.M801933200 on April 3, 2008

J. Biol. Chem., Vol. 283, Issue 21, 14685-14693, May 23, 2008
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Biogenesis of Short Intronic Repeat 27-Nucleotide Small RNA from Endothelial Nitric-oxide Synthase Gene*

Ming-Xiang Zhang{ddagger}§1, Cheng Zhang{ddagger}§, Ying H. Shen{ddagger}, Jian Wang{ddagger}, Xiao Nan Li{ddagger}§, Yun Zhang§, Joseph Coselli{ddagger}, and Xing Li Wang{ddagger}2

From the {ddagger}Adult Section of Cardiothoracic Surgery, Texas Heart Institute at St Luke's Episcopal Hospital, Division of Cardiothoracic Surgery, Michael E. DeBakey Department of Surgery, Baylor College of Medicine, Houston, Texas 77030 and §The Key Laboratory of Cardiovascular Remodeling and Function Research, Chinese Ministry of Education and Chinese Ministry of Public Health, Shandong University, Qilu Hospital, Jinan, Shandong 250100, China

Endothelial nitric-oxide synthase (eNOS) is a constitutively expressed gene in endothelium that produces NO and is critical for vascular integrity. Previously, we reported that the 27-nucleotide (nt) repeat polymorphism in eNOS intron 4, a source of 27-nt small RNA, which inhibits eNOS expression, were associated with cardiovascular risk and expression of the eNOS gene. In the current study, we investigated the biogenesis of the intron 4-derived 27-nt small RNA. Using Northern blot, we showed that the eNOS-derived 27-nt short intronic repeat RNA (sir-RNA) expressed only in the eNOS expressing endothelial cells. Cells containing 10 x 27- or 5 x 27-nt repeats produced higher levels of 27nt sir-RNA and lower levels of eNOS mRNA than the cells with 4 x 27-nt repeats. The 27nt sir-RNA was mostly present within the endothelial nuclei. When the splicing junctions of the 27-nt repeat containing intron 4 in the full-length eNOS cDNA vector were mutated, 27nt sir-RNA biogenesis was abolished. Suppression of Drosha or Dicer diminished the biogenesis of the 27nt sir-RNA. Our study suggests that the 27nt sir-RNA derived through eNOS pre-mRNA splicing may represent a new class of small RNA. The more eNOS is transcribed or higher number of the 27-nt repeats, the more 27nt sir-RNA is produced, which functions as a negative feedback self-regulator by specifically inhibiting the host gene eNOS expression. This novel molecular model may be responsible for quantitative differences between individuals carrying different numbers of the polymorphic repeats hence the cardiovascular risk.


Received for publication, March 10, 2008 , and in revised form, April 3, 2008.

* This work was supported, in whole or in part, by National Institutes of Health NHLBI Grants R01HL071608, R01HL066053, and P50HL083794 (to X. L. W.). This work was also supported by American Heart Association Grants 0440001N and 0565134Y (to X. L. W.) and National 973 Research Project Grant 2006CB503803 (to C. Z.). The costs of publication of this article were defrayed in part by the payment of page charges. This article must therefore be hereby marked "advertisement" in accordance with 18 U.S.C. Section 1734 solely to indicate this fact.

1 To whom correspondence may be addressed. E-mail: mzhang1{at}bcm.edu.

2 To whom correspondence may be addressed: BCM 390, One Baylor Plaza, Houston, TX 77030. Tel.: 832-355-9939; Fax: 832-355-9951; E-mail: xlwang{at}bcm.edu.


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M.-X. Zhang, C. Zhang, Y. H. Shen, J. Wang, X.-N. Li, L. Chen, Y. Zhang, J. S. Coselli, and X. L. Wang
Effect of 27nt Small RNA on Endothelial Nitric-Oxide Synthase Expression
Mol. Biol. Cell, September 1, 2008; 19(9): 3997 - 4005.
[Abstract] [Full Text] [PDF]




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