Papers In Press, published online ahead of print December 14, 2006
J. Biol. Chem, 10.1074/jbc.M608119200
Submitted on August 23, 2006
Revised on December 13, 2006
Accepted on December 14, 2006
Biochemical evidence that phaZ gene encodes a specific intracellular medium chain length polyhydroxyalkanoate depolymerase in Pseudomonas putida KT2442: characterization of a paradigmatic enzyme
Laura I. De Eugenio, Pedro García, José M. Luengo, Jesús M. Sanz, Julio San Román, José Luis García, and María A. Prieto
Molecular Microbiology, Centro de Investicaciones Biologicas, CSIC, Madrid, Madrid 28040
Corresponding Author: auxi{at}cib.csic.es
Polyhydroxyalkaoates (PHAs) can be catabolized by many microorganisms using intra or extracellular PHA depolymerases. Most of our current knowledge on the intracellular enzyme coding genes comes from the analysis of short- chain- length PHA (scl-PHA) depolymerases, whereas medium- chain- length PHA (mcl-PHA) intracellular depolymeration systems still remained to be characterized. The phaZ gene of some Pseudomonas putida strains has been identified only by mutagenesis and complementation techniques as putative intracellular mcl-PHA depolymerase. However, none of their corresponding encoded PhaZ enzymes have been characterized in depth. In this study the PhaZ depolymerase from P. putida KT2442 has been purified and biochemically characterized after its overexpression in Escherichia coli. To facilitate these studies we have developed a new and very sensitive radioactive method for detecting PHA hydrolysis in vitro. We have demonstrated that PhaZ is an intracellular depolymerase that is located in PHA granules and that hydrolyzes specifically mcl-PHAs containing aliphatic and aromatic monomers. The enzyme behaves as a serine hydrolase that is inhibited by phenylmethylsulfonyl fluoride. We have modeled the three-dimensional structure of PhaZ complexed with a 3-hydroxyoctanoate dimer. On the light of this model, the enzyme seems to be built up from a core a/ß hydrolase-type domain capped with a lid structure with an active site containing a catalytic triad buried near the connection between domains. All these data constitute the first biochemical characterization of PhaZ and allow us to propose this enzyme as the paradigmatic representative of intracellular endo-exo mcl-PHA depolymerases.